Publications

2023

• Clavel P., Louis L., Der Sarkissian C., Thèves C., Gillet C. et al. 2023. Improving the extraction of ancient Yersinia pestis genomes from the dental pulp. iScience, May 26(5), 106787.
• Braga J., Wood BA., Zimmer VA., Moreno B., Miller C. et al. 2023 Grine Hominin fossils from Kromdraai and Drimolen inform Paranthropus robustus craniofacial ontogeny. Science Advances, Vol. 9, No. 18
• Taylor W.T.T., Librado P., Hunska Tašunke Icu M. (Chief Joseph American Horse), Shield C. Chief Gover, Arterberry J. [83 authors], L. Orlando. 2023. Early dispersal of domestic horses into the Great Plains and northern Rockies. Science. 2023 Mar 31;379(6639):1316-1323
• Guarino-Vignon, P., Lefeuvre, M., Chimènes, A. et al. 2023. Genome-wide analysis of a collective grave from Mentesh Tepe provides insight into the population structure of early neolithic population in the South Caucasus. Commun Biol 6, 319
• Klassen l., Rasmussen U., Kvelborg J., Richards M. Orlando L. et al. 2023. Ginnerup Revisited. New Excavations at a Key Neolithic Site on Djursland, Denmark. JNA: 25.35-65
• Esclassan R, Baron P, Maggiolo M, Vergnes JN. 2023. The Hôtel-Dieu Saint-Jacques of Toulouse : Oldest Dental Site still in Activity ? J Hist Dent Spring ;71(1) :2-9.
• Liu X., Seguin-Orlando A., Chauvey L., Tressières G., Schiavinato S. et al 2023. DNA methylation-based profiling of horse archaeological remains for age-at-death and castration. ISCIENCE (2023), 106144, March 17
• Orlando L. 2023. The genomic history of ice-age. Nature, News and Views 615, 41-42
• Wagner S., Seguin-Orlando A., Leplé J.C., Leroy T., Lalanne C. et al. 2023. Tracking population structure and phenology through time using ancient genomes from waterlogged white oak wood. Molecular Ecology, Feb. 2023
• Truchetto T., Dumoncel J. Nabet C., Galibourg A. 2023. Computer-assisted evaluation and feedback of a complete student class for preclinical tooth preparation. J Dent Educ. 2023;1–4
• Braga J., Thackeray JF., Zipfel B. 2022. The Kromdraai early hominin-bearing site. A review of recent findings. L’Anthropologie, in Press

2022

• Todd E.T., Tonasso-Calvière L., Chauvey L., Schiavinato S., Fages A. […] Orlando L. 2022. The genomic history and global expansion of domestic donkeys. Science 377, 1172-1180
• Guarino-Vignon P., Marchi N., Chimènes A., Monnereau A., Kroll S. et al. 2022. Genetic analysis of a bronze age individual from Ulug-depe (Turkmenistan). Front. Genet., 22 August 2022 Sec. Evolutionary and Population Genetics
• Braga, J., Chinamatira, G., Zipfel, B. et al. New fossils from Kromdraai and Drimolen, South Africa, and their distinctiveness among Paranthropus robustus. Sci Rep 12, 13956 (2022). https://doi.org/10.1038/s41598-022-18223-7
• Liu X, Orlando L. 2022. mapDATAge: a ShinyR package to chart ancient DNA data through space and time. Bioinformatics, btac425
• Peters J, Lebrasseur O, Irving-Pease EK, Larson G. 2022. The biocultural origins and dispersal of domestic chickens. PNAS, 119 (24) e2121978119
• Cai D, Zu S, Gong M, Zhang N, Wen J et al. 2022. Radiocarbon and genomic evidence for the survival of Equus Sussemionus until the late Holocene. : eLife 2022; 11:e73346 doi:10.7554/eLife.73346
• Suchan T, Chauvey L, Poullet M, Tonasso-Calvière L, Schiavinato A et al. 2022. Assessing the impact of USER-treatment on hyRAD capture applied to ancient DNA. Molecular Ecology Resources, 10 Apr 2022
• Guarino-Vignon P, Marchi N, Bendezu-Sarmiento J. et al. 2022 Genetic continuity of Indo-Iranian speakers since the Iron Age in southern Central Asia. Sci Rep 12, 733.
• Librado P, Orlando L. 2022. Struct-f4: a Rcpp package for ancestry profile and population structure inference from F₄ statistics. Bioinformatics, btac046
• Wang YC, Pedersen MW, Alsos IG, De Sanctis B, Racimo F et al. 2022. Late Quaternary dynamics of Arctic biota from ancient environmental genomics. Nature 603(7903): E31
• Slimak L, Zanolli C, Higham T, Frouin M, Schwenninger JL et al. 2022. Modern human incursion into Neanderthat territories 54,000 years ago at Mandrin, France. Science advances 8(6).
• Clavel B, Lepetz S, Chauvey L, Schiavinato S, Tonasso-Calviere L et al. 2022. Sex in the city: Uncovering sex-specific management of equine resources from prehistoric times to the Modern Period in France. Journal of archaeological Science: reports, Vol 41, Feb, 103341
• Barreau JB, Gagnier A, Gaugne R, Marchand G, Gómez JC, Gouranton V, Colleter R. 2022. Use of Different Digitization Methods for the Analysis of Cut Marks on the Oldest Bone Found in Brittany (France). Applied Sciences 12, 1381.https://www.mdpi.com/2076-3417/12/3/1381

2021

• Liu X, Zhang L, Liu W, Li Y, Pan J et al. 2021. A single-nucleotide mutation within the TBX3 enhancer increased body size in Chinese horses. Curr Biol, In press
• Macé M, Richeval C, Alcouffe A, Romanova L, Gérard P et al. 2021. At the Origins of Tobacco-Smoking and Tea Consumption in a Virgin Population (Yakutia, 1650–1900 A.D.): Comparison of Pharmacological, Histological, Economic and Cultural Data. Biology 2021, 10(12), 1271
• Crubézy E. 2021. Hiding the dead in caves and sacralizing them in dolmens. Préhistoires Méditerranéennes, 21-38
• Lepetz S, Clavel B, Alioglu D, Chauvey L, Schiavinato S et al. 2021. Historical management of equine resources in France from the Iron Age to the Modern Period. Journal of Archaeological Science: Reports. vol 40, Part B, 103250.
• Librado P, Khan N, Fages A, Kusliy MA, Suchan T et al. 2021. The origins and spread of domestic horses from the Western Eurasian steppes. Nature, October 2021
• Moltke I, Korneliussen TS, Seguin-Orlando A, Moreno-Mayar AJ, La Pointe E et al. 2021. Identifying a living great-grandson of the Lakota Sioux leader Tatanka Iyotake (Sitting Bull). Science Advances, 7(44), October 2021.
• Suchan T, Kusliy M, Khan N, Chauvey L, Tonasso-Calvière L et al. 2021. Performance and automation of ancient DNA capture with RNA hyRAD probes. Mol Ecol Res, 28 September 2021.
• Crubezy E, Duchesne S, Razafindrazaka H, Romanova L, Gerard P et al. 2021. Sucrose Is Not the Whole Story: Risk Factors and Oral Health at the Contact (Yakutia, Siberia-16th/19th). Biology, 10(10)
• Braga J, Samir C, Fradi A, Feunteun Y, Jakata K et al. 2021. Cochlear shape distinguishes southern African early hominin taxa with unique auditory ecologies. Sci Rep 11, 17018
• Clavel P, Dumoncel J, Der Sarkissian C, Seguin-Orlando A, Calvière-Tonasso L et al. 2021. Assessing the predictive taxonomic power of the bony labyrinth 3D shape in horses, donkeys and their F1-hybrids. Journal of Archaeological Science 131.
• Vershinina AO, Heintzman PD, Froese DG, Zazula G, Cassatt‐Johnstone M et al. 2021. Ancient horse genomes reveal the timing and extent of dispersals across the Bering Land Bridge. Molecular Ecology, special issue May 2021.
• Bataille CP, Jaouen K, Milano S, Trost M, Steinbrenner S et al. 2021. Triple sulfur-oxygen-strontium isotopes probabilistic geographic assignment of archaeological remains using a novel sulfur isoscape of western Europe. PLOS ONE 16(5): e0250383.
• Colleter R, Bataille CP, Dabernat H, Pichot D, Hamon P et al. 2021. The last battle of Anne of Brittany: Solving mass grave through an interdisciplinary approach (paleopathology, biological anthropology, history, multiple isotopes and radiocarbon dating). PlosOne 16(5): e0248086
• Colleter R, Barreau J-B. 2021. 3D Reconstruction and Geostatic Analysis of an Early Medieval Cemetery (Olonne-sur-Mer, France). Remote Sensing 13, 1688.
• Seguin-Orlando A, Costedoat C, Der Sarkissian C, Tzortzis S, Kamel C. et al. 2021. No particular genomic features underpin the dramatic economic consequences of 17th century plague epidemics in Italy. iScience, 24(4), 23 April 2021, 102383
• Taylor WTT, Pruvost M, Posth C, Rendu W, Krajcarz MT et al. 2021. Evidence for early dispersal of domestic sheep into central Asia. Nat. Hum. Behav. , 8 April 2021
• Kingsley NB, Hamilton NA, Lindgren G, Orlando L, Bailey E et al. 2021. « Adopt-a-Tissue” Initiative Advances Efforts to Identify Tissue-Specific Histone Marks in the Mare. Front. Genet., 26 March 2021
• Vila E, Abrahami P, Albesso M, Amane A, Bader C et al. 2021. EVOSHEEP: the makeup of sheep breeds in the ancient Near East. Antiquity, 95(379), E2.
• Orlando L, Allaby R, Skoglund P, Der Sarkissian C, Stockhammer PW et al 2021. Ancient DNA analysis. Nat Rev Methods Primers, 1, 14
• Galibourg A, Cussat-Blanc S, Dumoncel J, Telmon N, Monsarrat P, Maret D. 2021. Comparison of different machine learning approaches to predict dental age using Demirjian’s staging approach. Int J Legal Med. (Epub ahead of print)
• Seguin-Orlando A, Donat R, Der Sarkissian C, Southon J, Theves C et al. 2021. Heterogeneous Hunter-Gatherer and Steppe-Related Ancestries in Late Neolithic and Bell Beaker Genomes from Present-Day France. Curr Biol, 31: 1-12.
• Librado P, Orlando L. 2021. Genomics and the Evolutionary History of Equids. Annual Review of Animal Biosciences Vol. 9 :- (Volume publication date February 2021). Review in Advance first posted online on November 16, 2020. (Changes may still occur before final publication.)
• Froment C, Zanolli C, Hourset M, Mouton-Barbosa E, Moreira A. et al. 2021. Comparison of human and non-human primate tooth proteomes as a basis for the study of ancient proteins. J Proteomics, 231: 104045.
• Colleter R 2021. Archéologie du handicap et inégalités sociales au couvent des Jacobins de Rennes (XIIIe-XVIIIe siècles). Les Nouvelles de l’archéologie 165, 56–61.http://www.editions-msh.fr/livre/?GCOI=27351100065750&fa=details
• Colleter R 2021. Inégaux jusque dans la mort. In Garcia D. La Fabrique de La France. 20 Ans d’archéologie Préventive, (Flammarion / Inrap), pp. 198–205.https://editions.flammarion.com/la-fabrique-de-la-france/9782080234704

2020

• Orlando L. 2020. The Evolutionary and Historical Foundation of the Modern Horse : Lessons from Ancient Genomics. Annual Review of Genetics. vol. 54
• Dumoncel J, Subsol G, Durrleman S, Bertrand A, de Jager E. et al. 2020. [Are endocasts reliable proxies for brains ? A 3D quantitative comparison of the extant human brain and endocast]. J. of Anat., 00 : 1– 9.
• Margaryan A, Lawson DJ, Sikora M, Racimo F, Rasmussen S et al. 2020. Population genomics of the Viking world. Nature. vol. 585: 390-396.
• Granado JD, Dill N, Gaunitz C, Fages A, Khan N et al. 2020. The mules that are not mules – metrics, morphology, archaeogenomics and mtDNA d-loop diversity in equids from Roman Switzerland. J Archaeol. Science, vol. 123 , 105253
• Zvénigorosky V, Duchesne S, Romanova L, Gérard P, Petit C et al.  2020. The genetic legacy of legendary and historical Siberian chieftains. Commun Biol vol. 3, 581. 
• Fordham DA, Jackson ST, Brown C, Huntley B, Brook BW. et al. 2020. Using paleo-archives to safeguard biodiversity under climate change.Science, vol. 369 (6507,) eabc5654
• Keyser C, Zvénigorosky V, Gonzalez A, Fausser J-L, Jagorel F et al. 2020. Genetic evidence suggests a sense of family, parity and conquest in the Xiongnu Iron Age nomads of Mongolia. Hum Genet (July)
• Orlando L. 2020. Filling Important Gaps in the Genomic History of Southwest Asia. Cell., vol. 181 (5): 966-968
• Dolle D, Fages A, Schiavinato S, Tonasso-Calviere L, Chauvey L. et al. 2020. CASCADE : a Custom-made Archiving System for the Conservation of Ancient DNA Experimental Data. Front. Ecol. Evol, vol. 23
• Colleter R, Romain J-B, Barreau J-B. 2020. HumanOS : an open source nomadic software database for physical anthropology and archaeology. Virtual Archaeology Review, vol. 11 ( 23): 94-105
• Bouakaze C, Delehelle F, Saenz-Oyhereguy N, Moreira A, Schiavinato S. et al. 2020. Predicting haplogroups using a versatile machine learning program (PredYMaLe) on a new mutationally balanced 32 Y-STR multiplex (CombYplex): Unlocking the full potential of the human STR mutation rate spectrum to estimate forensic parameters. FSI Genet. 48: 102342.
• Jaouen K, Trost M., Bourgon N, Colleter R, Le Cabec A. et al. 2020. Zinc isotope variations in archeological human teeth (Lapa Do Santo, Brazil) reveal dietary transitions in childhood and no contamination from gloves. PLOS ONE, vol. 15 (5) : e0232379. 
• Barreau J-B and Colleter R. 2020. Virtualanthropy: towards an open-source tool for the visualization of 2D anthropology images positioned in 3D. Open Access J Arch & Anthropol 2 (5).
• Crubézy E, Telmon N. 2020. Pandemic-related excess mortality (COVID-19), public health measures and funerary rituals. EClinicalMedicine (May)
• Romanova L, Stépanoff C, Telmon N, Crubézy E. 2020. Health access inequities and magic medicine : the first ancient evidence ? The Lancet 395 (10233), 1343-13442020
• Zvénigorosky V, Sabbagh A, Gonzalez A, Fausser JL, Palstra F et al. 2020. The limitations of kinship determinations using STR data in ill-defined populations. Int J Legal Med., 134:1981–1990
• Poullet M and Orlando L. 2020. Assessing DNA Sequence Alignment Methods for Characterizing Ancient Genomes and Methylomes. Front. Ecol. Evol. (May)
• Fages A, Seguin-Orlando A, Germonpré M and Orlando L. 2020. Horse males became over-represented in archaeological assemblages during the Bronze Age. Journal of Archaeological Science : Reports. Volume 31, June 2020, 102364
• Gauthier J, Pajkovic M, Neuenschwander S, Kaila L, Schmid S et al. 2020. Museomics identifies genetic erosion in two butterfly species across the 20th century in Finland. Mol. Ecol. Res. 20(5): 1191-1205.
• Frantz LAF, Bradley DG, Larson G, Orlando L. 2020 Animal domestication in the era of ancient genomics. Nat Rev Genet, 21: 449–460.
• Wilkin S, Ventresca Miller A, Taylor WTT, Miller BK, Hagan RW et al. 2020. Dairy Pastoralism Sustained Eastern Eurasian Steppe Populations for 5,000 Years. Nat Ecol Evol, 4 (3): 346-355.
• Der Sarkissian C, Möller P, Hofman CA, Ilsøe P, Rick TC et al. 2020. Unveiling the Ecological Applications of Ancient DNA From Mollusk Shells. Front. Ecol. Evol. (March)
• Wagner S., Plomion C., Orlando L. 2020. Uncovering Signatures of DNA Methylation in Ancient Plant Remains From Patterns of Post-mortem DNA Damage. Front. Ecol. Evol. (January)

2019

• Orlando L. 2019. Ancient Genomes Reveal Unexpected Horse Domestication and Management Dynamics. BioEssays. December 2019
• Colleter R., Paul-Anthelme A. 2019.Les restes humains archéologiques en France : entre objets de science et sujets de droit. Can J Bioeth / Rev Can Bioeth. 2(3):97-108
• Pan L, Dumoncel J, Mazurier A, Zanolli C. 2019. Structural analysis of premolar roots in Middle Pleistocene hominins from China. J. Hum Evol. Vol. 136: 102669
• Romanova L, Balter V, Simon L, Gerard P, Pokatilova N et al. 2019. Diet of autochthonous populations in Yakutia using isotopic, ethnographic, historical and archaeological data. J. Archaeol. Sci. : Reports, Vol. 28: 102022.
• Cazenave M, Braga J, Oettlé A, Pickering T, Heaton J. et al 2019. Cortical bone distribution in the femoral neck of Paranthropus robustus. J Hum Evol. (135): 102666
• Froment C, Hourset M, Sáenz-Oyhéréguy N, Mouton-Barbosa E, Willmann C. et al. 2019. Analysis of 5000 year-old human teeth using optimized large-scale and targeted proteomics approaches for detection of sex-specific peptides. J. Proteomics, Vol. 211: 103548
• Mata X, Renaud G, Mollereau C. 2019. The repertoire of family A-peptide GPCRs in archaic hominins. Peptides. Vol. 122: 170154
• Liu X, Zhang Y, Li Y, Pan J, Wang D. et al. 2019. EPAS1 gain-of-function mutation contributes to high-altitude adaptation in Tibetan horses. Mol Biol Evol., Vol. 36(11): 2591–2603
• Orlando L and Librado P. 2019. Origin and Evolution of Deleterious Mutations in Horses. Genes (Basel). 10(9): 649. 
• Cappellini E, Welker F, Pandolfi L, Ramos-Madrigal J, Samodova D. et al, 2019. Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny. Nature, 574: 103–107
• Tacail T, Martin JE, Arnaud-Godet F, Thackeray JF, Cerling TE. et al. 2019. Calcium isotopic patterns in enamel reflect different nursing behaviors among South African early hominins. Sci. Adv. vol. 5(8) : eaax3250
• Braga J, Samir L, Risser J, Dumoncel J, Descouens D et al. 2019. Cochlear shape reveals that the human organ of hearing is sex-typed from birth. Scientific Reports, 9: 10889.
• Fages A, Hanghøj K, Khan N, Gaunitz C, Seguin-Orlando et al. 2019. Tracking five millennia of horse management with extensive ancient genome time series. Cell, 177 (6) : 1419-1435.
• Renaud G, Hanghøj K, Korneliussen TS, Willerslev E, Orlando L. 2019. Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples. Genetics. 12 (3): 587-614.
• Braga J., Zimmer V., Dumoncel J., Samir C., de Beer F. et al. 2019. Efficacy of diffeomorphic surface matching and 3D geometric morphometrics for taxonomic discrimination of Early Pleistocene hominin mandibular molars. J Hum Evol. 130: 21-35.
• Hanghøj K., Renaud G., Albrechtsen A., Orlando L. 2019. DamMet : ancient methylome mapping accounting for errors, true variants, and post-mortem DNA damage. GigaScience, Vol. 8 (4), giz025.
• Zinger L, Bonin A, Alsos IG, Bálint M, Bik H et al. 2019. DNA metabarcoding-Need for robust experimental designs to draw sound ecological conclusions Mol Ecol. 2019 28: 1857-1862.
• Donat R, Mokrane F-Z, Rousseau H, Dedouit F, Telmon N et al. 2019. The antiquity of the spondyloarthritides : Presentation of one of the oldest Neolithic cases in Western Europe. Int J of Paleopathology, 24: 229–235
• Pont C, Wagner S, Kremer A, Orlando L, Plomion C et al. 2019. Paleogenomics : reconstruction of plant evolutionary trajectories from modern and ancient DNA. Genome Biol., 20: 29.
• Nengovhela A, Braga J, Denys C, de Beer F, Tenailleau C, Taylor P. Associated tympanic bullar and cochlear hypertrophy define adaptations to true deserts in African gerbils and laminate-toothed rats (Muridae : Gerbillinae and Murinae). J Anat, 234: 179-192.

2018

• Nistelberger HM , Pálsdóttira AH , Staar B, Leifsson R, Gondeka AT. et al. 2018. Sexing Viking Age horses from burial and non-burial sites in Iceland using ancient DNA. J. Archaeol. Sci., Vol. 101 : 115-122.
• Kalbfleisch TS, Rice ES, DePriest MS Jr, Walenz BP, Hestand MS, et al. 2018. Improved reference genome for the domestic horse increases assembly contiguity and composition. Communs Biol, 1: 197.
• Orlando L. 2018. Late Bronze Age cultural origins of dairy pastoralism in Mongolia. PNAS, 115 (48): 12083-12085
• Leonardi M, Boschin F, Giampoudakis K, Beyer RM, Krapp M, et al. 2018. Late Quaternary horses in Eurasia in the face of climate and vegetation change. Sci Adv, vol. 4(7): eaar5589.
• Zanolli C, Martinón-Torres M, Bernardini F, Boschian G, Coppa A et al. 2018 The Middle Pleistocene (MIS 12) human dental remains from Fontana Ranuccio (Latium) and Visogliano (Friuli-Venezia Giulia), Italy. A comparative high resolution endostructural assessment. PLoS One. (October), 13(10): e0189773.
• Taylor W, Schnaider S, Abdykanova A, Fages A, Welker F et al. 2018. Early pastoral economies along the Ancient Silk Road : biomolecular evidence from the Alay Valley Kyrgyzstan. PLoS One 13:ee0205646.
• Lewallen EA, Salib CG, Trousdale WH, Berry CE, Hanssen GM. et al. 2018. Molecular pathology of total knee arthroplasty instability defined by RNA-seq. Genomics 110(5): 247-256.
• Jaouen K, Colleter R, Pietrzak A, Pons ML, Clavel B, et al. 2018. Tracing intensive fish and meat consumption using Zn isotope ratios : evidence from a historical Breton population (Rennes, France). Nature – Scientific Reports, vol. 8 (5077)
• McColl H, Racimo F, Vinner L, Demeter F, Gakuhari T, et al. 2018. The prehistoric peopling of Southeast Asia. Science 361 (6397): 88-92.
• Carayon D, Adhikari K, Monsarrat P, Dumoncel J, Braga J et al. 2018. A geometric morphometric approach to the study of variation of shovel-shaped incisors. Am J Phys Anthropol. 168 (1): 229-241.
• Janečka J, Davis B, Ghosh S, Paria N, Das P et al. 2018. Horse Y chromosome assembly displays unique evolutionary features and putative stallion fertility genes. Nat Commun, 9: 2945.
• Fourvel J-B, Thackeray JF, Brink JS, O’Regan H, Braga J. 2018. Taphonomic interpretations of a new Plio-Pleistocene hominin-bearing assemblage at Kromdraai (Gauteng, South Africa). Quat. Sci. Rev., 190: 81-97.
• Willmann C, Mata X, Hanghoej K, Tonasso L, Tisseyre L, et al. 2018. Oral health status in historic population : Macroscopic and metagenomic evidence. PLoS One 13: e0196482.
• Damgaard PB, Marchi N, Rasmussen S, Peyrot M, Renaud G et al. 2018. 137 ancient human genomes from across the Eurasian steppes. Nature 557: 369-374.
• Mühlemann B, Jones TC, Damgaard PB, Allentoft ME, Shevnina I, et al. 2018. Ancient hepatitis B viruses from the Bronze Age to the Medieval period. Nature 557: 418-423.
• Colleter R, Dedouit F, Duchesne S, Gerard P, Dercle L. et al. 2018. Study of a seventeenth-century French artificial mummy: autopsical, native, and contrast-injected CT investigations. Int J Legal Med, 132: 1405–1413.
•  de Barros Damgaard P, Martiniano R, Kamm J, Moreno-Mayar JV, Kroonen G. et al. 2018. The first horse herders and the impact of early Bronze Age steppe expansions into Asia. Science, vol. 360 (6396): eaar7711.
• Librado P and Orlando L. 2018. Detecting signatures of positive selection along defined branches of a population tree using LSD. Mol Biol Evol. vol. 35(6): 1520-1535.
• Dias GM, Bidault A, Le Chevalier P, Choquet G, Der Sarkissian C. et al. 2018. Vibrio tapetis Displays an Original Type IV Secretion System in Strains Pathogenic for Bivalve Molluscs. Front. Microbiol. 9: 227.
• Alberto FJ, Boyer F, Orozco-terWengel P, Streeter I, Servin B. et al. 2018. Convergent genomic signatures of domestication in sheep and goats. Nat Commun. 9: 813.
• Renaud G, Petersen B, Seguin-Orlando A, Bertelsen MF, Waller A, et al. 2018. Improved de novo genomic assembly for the domestic donkey. Science Advances 4: eaaq0392
• Brucato N, Fernandes V, Mazières S, Kusuma P, Cox MP. et al. 2018. The Comoros Show the Earliest Austronesian Gene Flow into the Swahili Corridor. Am J Hum Genet. 102(1): 58-68.
• Reina N, Trousdale WH, Salib CG, Evertz LQ, Berglund LJ. et al. P. 2018. Validation of a dynamic joint contracture measuring device in a live rabbit model of arthrofibrosis. J Orthop Res. 36 (8): 2186-2192.
• Hollard C, Zvénigorosky V, Kovalev A, Kiryushin Y, Tishkin A. et al. 2018. New genetic evidence of affinities and discontinuities between bronze age Siberian populations. AJPA. 167(1): 97-107.
• Gaunitz C, Fages A, Hanghøj K, Albrechtsen A, Khan N. et al. 2018. Ancient genomes revisit the ancestry of domestic and Przewalski’s horses. Science, vol. 360 (6384): eaao3297.
• Wagner S, Lagane F, Seguin-Orlando A, Schubert M, Leroy T. et al. 2018. High-Throughput DNA sequencing of ancient wood. Mol Ecol. vol. 27 (5)
• Delehelle F, Cussat-Blanc S, Alliot JM, Luga H, Balaresque P. 2018. ASGART : fast and parallel genome scale segmental duplications mapping. Bioinformatics, vol. 34 (16): 2708-2714.
• Pierron D., Heiske M., Razafindrazaka H., Pereda-loth V., Sanchez J. et al.  Strong selection during the last millennium for African ancestry in the admixed population of Madagascar.. Nat Commun, 9(932)
• Pedersen CT, Albrechtsen A, Etter PD, Johnson EA, Orlando L. et al. 2018. A southern African origin and cryptic structure in the highly mobile plains zebra. Nat Ecol Evol 2: 491-498. 22.
• Moreno-Mayar JV, Potter BA, Vinner L, Steinrücken M, Rasmussen S. et al. 2018. Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans. Nature 553: 203-207.
• Brucato N, Kusuma P, Beaujard P, Sudoyo H, Cox MP. et al. 2017 Genomic admixture tracks pulses of economic activity over 2,000 years in the Indian Ocean trading network. Sci. Rep. 7: 2919.
• Zanolli C, Pan L, Dumoncel J, Kullmer O, Kundrát M, Liu W, Macchiarelli R, Mancini L, Schrenk F, Tuniz C. 2018. Inner tooth morphology of Homo erectus from Zhoukoudian. New evidence from an old collection housed at Uppsala University, Sweden. J H Evol, 116 : 1-13

2017

• Heintzman PD, Zazula GD, MacPhee R, Scott E, `Cahill JA. et al. 2017. A new genus of horse from Pleistocene North America. Elife 6 pii:e29944.
• Colleter R, Clavel B, Pietrzak A, Duchesne S, Schmitt L. et al. 2017. Social status in late medieval and early modern Brittany : insights from stable isotope analysis. Archaeol Anthropol Sci. 11: 823-837
• Metcalf J, Song Se Jin, Morton JT, WeissS, Seguin-Orlando A, et al. 2017. Evaluating the impact of domestication and captivity on the horse gut microbiome. Sci. Rep. 7: 15497.
• Fortes-Lima C, Gessain A, Ruiz-Linares A, Bortolini MC, Migot-Nabias F, et al. JM. 2017. Genome-wide Ancestryand Demographic History of African-Descendant Maroon Communities from French Guiana and Suriname. Am J Hum Genet 101(5): 725-736.
• Beaudet A, Dumoncel J, de Beer F, Durrleman S, Gilissen E. et al. 2017 The endocranial shape of Australopithecus africanus : surface analysis of the endocasts of Sts 5 and Sts 60. J. Anatomy, 232 (2)
• Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J. et al. Earth Microbiome Project Consortium. 2017. A communal catalogue reveals Earth’s multiscale microbial diversity. Nature 551: 457-463.
• Benazzo A, Trucchi E, Cahill JA, Maisano Delser P, Mona S. et al. 2017. Survival and divergence in a small group : the extraordinary genomic history of the endangered Apennine brown bear stragglers. PNAS 114 (5): E9589-E9597.
• MacKenzie VJ, Song S, Delsuc F, Prest TL, Oliverio AM. et al. 2017. The effects of captivity on the mammalian gut microbiome. Integr Comp Biol 57(4): 690-704.
• Sikora M, Seguin-Orlando A, Sousa VC, Albrechtsen A, Korneliussen T. et al. 2017. Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers. Science 358 (6363): 659-62.
• Schaefer RJ, Schubert M, Bailey E, Bannasch DL, Barrey E. et al. 2017. Developing a 670k genotyping array to tag 2M SNPs across 24 horse breeds. BMC Genomics 18: 565.
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• Reina N, Cavaignac E, Trousdale WH, Laffosse JM, Braga J. 2017. Laterality and grip strength influence hand bone micro-architecture in modern humans, an HRpQCT study. J Anat. 230 (6)
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• Cucchi T, Mohaseb A, Peigne S, Debue K, Orlando L. et al. 2017. Detecting taxonomic and phylogenetic signals in equid cheek teeth : towards new palaeontological and archaeological proxies. R Soc Open Sci 4: 160997.
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BOOKS and Chapters

• Conquête du cheval. Une histoire génétique. 2023. L. Orlando, Ed. O. Jacob, 272p
• Louise de Quengo, une Bretonne du XVIIe siècle – Archéologie, anthropologie, histoire. 2021. Sous la direction de R. Colleter, D Pichot et E Crubézy. Ed. PUR, Collection Art et Société, 328p
• Dedouit F, Guilbeau Frugier C, Capuani C, Fatima-Zohra M, Savall F et al. 2021. Complementary investigations can help the forensic pathologist, the anthropologist and the archaeologist: selection of examples. Chap 3. In : Crimes in the Past: Archaeological and Anthropological Evidence, Pub. by Archaeopress, Ed. by Shvedchikova T, Moghaddam N, Barone PM
• Orlando L. 2021. L’ADN fossile, une machine à remonter le temps. Les tests ADN en archéologie. Ed. O. Jacob, 256p
• Hinguant S, Colleter RC. (sous la direction de). 202O. Le Solutréen de la vallée de l’Erve (Mayenne). Dix ans de recherche dans la grotte Rochefort,  Mémoires de la Société Préhistorique Française, 67, 442p.
• Clément J, Spruyt M, Davoudi H, Fages A, Mohaseb A et al. 2020. Les chevaux antiques du plateau iranien. Entre étude philologique, examen iconographique, recherche archéozoologique et analyse paléogénétique. In : Croiser les sciences pour lire les animaux, dir. by E. Baratay, Ed. De la Sorbonne Editions
• Fémelat A, Macé M and Orlando L. 2020. Les chevaux de Léonard de Vinci. Histoire de l’art versus mathématiques et biologie. In : Croiser les sciences pour lire les animaux, dir. by E. Baratay, Ed. De la Sorbonne Editions
• Orlando L. 2020. L’ADN ancien comme nouvelle source historique. In : Aux sources de l’histoire animale, dir. by E. Baratay, Ed. De la Sorbonne Editions
• Gendrot V, Barracand G, Duchesne S, Laurent O and Colleter R. 2020. Costumes et textile archéologique du XVIIe siècle en contexte funéraire : de la découverte à l’étude. In Castres A., Gaumy T., La fabrique de l’habit, Artisans, techniques et production du vêtement (XVe-XVIIIe siècle), (Paris: École nationale des chartes), p. 71-87
• Crubézy E. 2019. Aux origines des rites funéraires : voir, cacher, sacraliser. , Odile Jacob.
• Renaud G, Schubert M, Sawyer S and Orlando L. 2019 Authentication and Assessment of Contamination in Ancient DNA. In : Shapiro B., Barlow A., Heintzman P., Hofreiter M., Paijmans J. and Soares A. (eds) Ancient DNA. Methods in Molecular Biology, vol 1963. Humana Press, New York, NY, p. 163-194.
• Crubézy E and Nikolaeva D. 2017. Vainqueurs ou vaincus ? L’énigme de la Iakoutie. Ed O. Jacob, 256p
• Crubézy E. 2017. Demographic and epidemiological transition before the pharaohs. E Crubézy (dir). French Institute of Oriental Archaeology. 134